Protein Structure Quasi-Rigid Domain Decomposition

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Select Parameters

PDB Code: or PDB file:

Chain Identifier: (leave empty to decompose entire structure in the file)

Captured mobility threshold (%) Range: [0-99]

Reference: full text article
T. Aleksiev, R. Potestio, F.Pontiggia, S. Cozzini and C. Micheletti,
PiSQRD: a web server for decomposing proteins into quasi-rigid dynamical domains. Bioinformatics, 2009 vol. 25, num. 20, pag. 2743-2744

Advanced Options

Lowest-energy modes:

Use beta-Gaussian elastic network model. Use the first modes.
or
Use the 10 lowest energy modes provided in the following file:  
Click here for on-line article on Beta-Gaussian model.
Follow link for description of data format.